Datasets List
19 datasets

Publication name and date Genotypes Phenotypes Omics Data Sample size Dataset access Phenotype IDS Publication link Authors

Gunturkun et al., Genome-Wide Association Study on Three Behaviors Tested in an Open Field in Heterogeneous Stock Rats Identifies Multiple Loci Implicated in Psychiatric Disorders. Front Psychiatry. 2022 Feb 14;13:790566. doi: 10.3389/fpsyt.2022.790566. PMID: 35237186; PMCID: PMC8882588.

2022
3,513,494 Version 2019
Locomotion
Novel Object
Interaction
+1
None
1246
More details ontology for behavior phenotypes Hakan Gunturkun, Mustafa Chen, Hao Wang, Tengfei Chitre, Apurva St. Pierre, Celine Bimschleger, Hannah Cheng, Riyan Polesskaya, Oksana Solberg-Woods, Leah Palmer, Abraham Garcia Martinez, Angel Holl, Katie Gao, Jianjun

U01: Genetic Basis of Opioid Dependence Vulnerablility (U01DA045300)

9/30/2018
4,609,405, version R9
self- administration
drug-seeking
RNA-Seq
Goal: 1000 Current: 655
More details https://reporter.nih.gov/search/uklKYfh_tkGvcRicTWjt9w/project-details/10223254 Peter Kalivas W CHUNG, DONGJUN HARDIMAN, GERARD THOMAS SOLBERG WOODS,LEAH CICCOCIOPPO, ROBERTO

U01: Genomic analysis of avoidance learning in addiction (U01DA044468)

4/15/2018
4,609,405, version R9
Avoidance-Learning
RNA-Seq
Goal: 1200 Current: 1239
More details https://reporter.nih.gov/search/QH2CQwXvTEiz41loh28b6A/project-details/10098021 Thomas Jhou

U01: Genetics of Compulsive Cocaine Intake in Rats (U01DA043799)

4/1/2017
4,609,405, version R9
Addiction Index
Aggression Behavior
Defensive Behavior
+2
None
Goal: 1000 Current: 882
More details https://reporter.nih.gov/search/UmvTCDBpc0qYTmrAE7ML_w/project-details/9873956 Olivier George Abraham Palmer

U01: Genetics of Compulsive Oxycodone Intake in HS Rats (U01DA044451)

8/13/2019
4,609,405, version R9
Oxycodone infusions
Reward intake
Tail immersion
+1
None
Goal: 1000 Current: 619
More details https://reporter.nih.gov/search/f6C7xo1EpESCW4neFmUNOg/project-details/10356094 Olivier George Abraham Palmer

R01: Identification of Genes Regulating Bone Matrix Composition and Quality

9/15/2016
None
Bone density
None
Goal = 4800
More details Douglas Adams

U01:Characterization of Tandem Repeat and Structural Variants Contributing to Addictive Behaviors in Mice and Rats

Not available
4,609,405, version R9 None
None
More details Abraham Palmer Melissa Gymrek Jonathan Sebat

U01: Decoding the grammar of transcriptional enhancers regulating different stages of opioid use disorder

9/30/2020
4,609,405, version R9
RNA-Seq
ATAC-seq
RNA-Seq
None
More details Francesca Telese

Genetic basis for unilateral renal agenesis in heterogenous stock rats

TBD
Version R8
Unilateral renal agenesis
None
5585
More details Joel D. Leal-Gutiérrez Apurva S. Chitre Oksana Polesskaya Riyan Cheng Alexander F. Gileta Keita Ishiwari Christopher P. King Alexander Lamparelli Tengfei Wang Hao Chen Shelly B. Flagel Paul Meyer Terry E. Robinson Leah C. Solberg Woods Abraham A. Palmer Denghui Chen Michael Garrett Jerry Richards Cassandra L. Versaggi Connor Martin Celine L. St. Pierre, Jordan A. Tripi Wenyan Han Aidan Horvath Alesa Hughson Milad Mortazavi Hannah Bimschleger, Angel Garcia Martinez Tony George Katie Holl Jianjun Gao Bonnie Lin Daniel Munro

Structural equation modeling for understanding the genetic architecture of cocaine contextual conditioning and cocaine conditioned cue preference in heterogeneous stock rats undercover candidate genes for behavioral variation caused by cocaine exposure

TBD
Version R8
Cocaine contextual conditioning
cocaine conditioned cue preference
3050
More details Joel D. Leal-Gutiérrez Apurva S. Chitre Oksana Polesskaya Riyan Cheng Alexander F. Gileta Keita Ishiwari Christopher P. King Alexander Lamparelli Tengfei Wang Hao Chen Shelly B. Flagel Paul Meyer Terry E. Robinson Leah C. Solberg Woods Abraham A. Palmer Denghui Chen Michael Garrett Jerry Richards Cassandra L. Versaggi Connor Martin Celine L. St. Pierre, Jordan A. Tripi Wenyan Han Aidan Horvath Alesa Hughson Milad Mortazavi Hannah Bimschleger, Angel Garcia Martinez Tony George Katie Holl Jianjun Gao Bonnie Lin Daniel Munro

Genetic architecture for cecum metabolomics of heterogeneous stock rats undercover candidate genes for metabolome abundance and presence

TBD
Version R8
Cocaine Contextual Conditioning
Cocaine Conditioned cue Preference
Metabolomics
1000
More details Joel D. Leal-Gutiérrez Apurva S. Chitre Oksana Polesskaya Riyan Cheng Alexander F. Gileta Keita Ishiwari Christopher P. King Alexander Lamparelli Tengfei Wang Hao Chen Shelly B. Flagel Paul Meyer Terry E. Robinson Leah C. Solberg Woods Abraham A. Palmer Denghui Chen Wenyan Han Michael Garrett Jerry Richards Cassandra L. Versaggi Connor Martin Celine L. St. Pierre, Jordan A. Tripi Aidan Horvath Alesa Hughson Milad Mortazavi Hannah Bimschleger, Angel Garcia Martinez Tony George Katie Holl Jianjun Gao Bonnie Lin Daniel Munro

Chitre AS et al. Genome-Wide Association Study in 3,173 Outbred Rats Identifies Multiple Loci for Body Weight, Adiposity, and Fasting Glucose. Obesity (Silver Spring). 2020 Oct;28(10):1964-1973. doi: 10.1002/oby.22927. Epub 2020 AUG 29. PMID: 32860487; PMCID: PMC7511439.

2022
3,400,759 SNPs Version 2018
Body length with no tail
body length with tail
body weight
+5
None
3173
UCSD library parametrial-fat-weight-g_UBERON_UBERON:0010413 parametrial-fat-weight-g_MGI_MP:0005375 Body length with no tail CMO_0002804 (ontobee/PATO) Body length with tail CMO_0000078 (ontobee/PATO) Body weight CMO_0000079 (ontobee/PATO) Body Mass Index NoTail CMO_0002781 (ontobee/PATO) Retroperitoneal fat pad UBERON:0010411 Epididymal fat pad UBERON:0010412 https://pubmed.ncbi.nlm.nih.gov/32860487/ Apurva S Chitre Oksana Polesskaya Riyan Cheng Hannah Bimschleger Hao Chen Shelly B Flagel Paul Meyer Terry E Robinson Abraham A Palmer Leah C Solberg Woods Alexander F Gileta Keita Ishiwari Christopher P King Alexander Lamparelli Angel Garcia Martinez Tony George Katie Holl Jianjun Gao Cassandra L Versaggi Celine L St Pierre Jordan A Tripi Tengfei Wang Wenyan Han Jerry Richards Alesa Hughson

P50 Project 1: Neurogenetic Substrates of Cocaine Addiction

2019-2024
4,609,405, version R9
Intermittent access to cocaine
RNA-Seq
Goal: 1600 Current: 1911
More details None https://ratgenes.org/research-projects/rp1new/ Paul Meyer Chris King

P50 Project 2: Socially-acquired nicotine self-administration

4,609,405, Version R9
Open Field
Novel Object Interaction Test
Nicotine self-administration
+1
None
Goal: 4800 Current: 2600
More details None Hao Chen

P50 Project 3: Association between behavioral regulation and cocaine cue preference

2014-2024
4,609,405, version R9
Locomotor Response
Delay Discounting
Light Reinforcement
+5
None
Goal: 1600 Current: 1066
More details https://ratgenes.org/research-projects/rp3/ David Dietz Keita Ishiwari Paul Meyer Suzanne Mitchell Jerry Richards

P50 Project 4, P50: Network-based analysis

2019-2024
4,609,405, version R9
N/A
None
various
More details https://ratgenes.org/research-projects-rp4-networks/ Trey Ideker

P50 Project 1, P50: Genetic Studies of Incentive Salience

2014-2019
4,609,405, Version R9
Cocaine Contextual Conditioning
Novelty seeking
Pavlovian Conditioned Approach
None
1600
More details https://ratgenes.org/research-projects/rp1/ Shelly Flagel Terry Robinson

U01: Single-cell resolution analysis of chromatin accessibility and gene expression (U01DA050239)

5/1/2020
4,609,405, version R9
RNA-Seq
ATAC-seq
H3K27Ac
+1
RNA-seq, ATAC-seq, H3K27Ac, PLAC-seq
Goal: 96 Current: 96
More details https://reporter.nih.gov/search/4O2ekcqX80yU0a3FTHylnw/project-details/10360680 Francesca Telese

U01: Genetic Features of Delay Discounting in an HS Rat Model (U01DA046077)

7/1/2018
4,609,405, version R9
Delay Discounting
impulsivity
5-choice serial reaction time task
RNA-Seq
Goal: 1560 Current: 901
More details https://reporter.nih.gov/search/a5pMHTPdZkyjaaOw8MpZZA/project-details/10146324 Suzanne Mitchell
  • Abraham Palmer, PHD

    Abraham
  • Paul Meyer

    Paul
  • Trey Ideker

    Trey
  • Oksana Polesskaya

    Oksana
  • Leah Solsberg-Woods

    Leah
  • Anita Bandrowski

    Anita
  • Hao Chen

    Hao
  • Maryann Martone

    Maryann
  • David Dietz

    David
  • Jeffrey Grethe

    Jeffrey